⚠️ Only UCSF P1-P2 data ("research using public data sets") is allowed on the Wynton cluster as of 2026-01-30.
⚠️ Please note that the Wynton HPC service is being phased out as part of the Wynton Transition project and is scheduled to retire in early March, 2027. New research projects should generally use the newer FAC and CoreHPC environment instead. ⚠️
[Software Collections (SCL)] provides software versions that are […] more recent > than their equivalent versions included in the base Rocky 8 distribution.
To list all Software Collections installed on the development nodes, use:
[alice@dev2 ~]$ scl list-collections
gcc-toolset-10
gcc-toolset-11
gcc-toolset-12
gcc-toolset-13
gcc-toolset-14
gcc-toolset-9
Importantly, the above SCLs are available only on the development nodes.
To list all the packages that are part of one or more of these SCLs, use:
[alice@dev2 ~]$ scl list-packages gcc-toolset-11
gcc-toolset-11-toolchain-11.1-1.el8.x86_64
gcc-toolset-11-gdb-10.2-5.el8.x86_64
gcc-toolset-11-dwz-0.14-2.el8.x86_64
gcc-toolset-11-gcc-gfortran-11.2.1-9.2.el8_9.x86_64
gcc-toolset-11-runtime-11.1-1.el8.x86_64
gcc-toolset-11-valgrind-1:3.17.0-6.el8.x86_64
gcc-toolset-11-systemtap-runtime-4.5-6.el8.x86_64
gcc-toolset-11-libquadmath-devel-11.2.1-9.2.el8_9.x86_64
gcc-toolset-11-elfutils-0.185-5.el8.x86_64
gcc-toolset-11-libstdc++-devel-11.2.1-9.2.el8_9.x86_64
gcc-toolset-11-gcc-11.2.1-9.2.el8_9.x86_64
gcc-toolset-11-gcc-c++-11.2.1-9.2.el8_9.x86_64
gcc-toolset-11-11.1-1.el8.x86_64
gcc-toolset-11-elfutils-libelf-0.185-5.el8.x86_64
gcc-toolset-11-strace-5.13-7.el8.x86_64
gcc-toolset-11-systemtap-client-4.5-6.el8.x86_64
gcc-toolset-11-binutils-2.36.1-4.el8_9.x86_64
gcc-toolset-11-make-1:4.3-2.el8.x86_64
gcc-toolset-11-systemtap-4.5-6.el8.x86_64
gcc-toolset-11-systemtap-devel-4.5-6.el8.x86_64
gcc-toolset-11-elfutils-libs-0.185-5.el8.x86_64
gcc-toolset-11-perftools-11.1-1.el8.x86_64
gcc-toolset-11-elfutils-debuginfod-client-0.185-5.el8.x86_64
gcc-toolset-11-annobin-docs-10.23-1.el8.noarch
gcc-toolset-11-ltrace-0.7.91-1.el8.x86_64
gcc-toolset-11-gcc-gdb-plugin-11.2.1-9.2.el8_9.x86_64
Rocky 8 comes with GCC 8.5.0 (2021-05-14). Newer versions are
available via the gcc-toolset-NN SCLs. Here is an example how to
check the version of one of the newer version:
[alice@dev2 ~]$ scl enable gcc-toolset-12 "gcc --version"
gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-7)
Copyright (C) 2022 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Importantly, this approach of prefixing the original command call works also in job scripts.
scl enable (traditional) #
If you work interactively on one of the development nodes, you can also launch a new shell (typically Bash) with one or more SCLs enabled:
[alice@dev2 ~]$ scl enable gcc-toolset-12 "$SHELL"
[alice@dev2 ~]$ gcc --version
gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-7)
Copyright (C) 2022 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
To “unload” an SCLs, just return to the previous shell by exiting new SCL-enabled shell, i.e.
[alice@dev2 ~]$ exit
[alice@dev2 ~]$
module load CBI scl-gcc-toolset (recommended) #
An alternative approach to using scl enable for activating an SCL,
is to use module load to achieve the same, e.g.
[alice@dev2 ~]$ module load CBI scl-gcc-toolset/12
[alice@dev2 ~]$ gcc --version
gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-7)
Copyright (C) 2022 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
To go back to the built-in version of GCC, unload the module, i.e.
[alice@dev2 ~]$ module unload CBI scl-gcc-toolset/12
[alice@dev2 ~]$ gcc --version
gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-28)
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.